Prof. Dr. Denis Burdakov

Prof. Dr. Denis Burdakov
Full Professor at the Department of Health Sciences and Technology
ETH Zürich
Additional information
Research area
*Fully-funded PhD positions currently available in Neurobehavioural Dynamics Lab*
Denis Burdakov directs a research lab (part of ETH Neurobehavioural Dynamics Lab) focussing on functional deconstruction of neural circuitry mediating body-state sensing and behavioral control, using neuron-specific optogenetic, chemogenetic, and activity recording approaches. The Burdakov lab asks big cross-disciplinary questions, overlapping with both engineering (what control algorithms are best for performance in an uncertain world? what are their strengths and weaknesses?), and medicine (how can we target specific brain signals to treat common diseases?). Their experimental entry-points to these questions are genetically-defined "brain government" neurons of the hypothalamus. Such neurons - such as orexin/hypocretin neurons - which project CNS-wide, track internal body variables, and orchestrate fundamental aspects of energy balance, sleep-wake, voluntary movement, mood, and cognition. Appetite and arousal control, and their links to nutrition, have long been a key focus of the lab.
Joining Burdakov lab: Denis Burdakov is happy to discuss joining the lab with decisive and motivated candidates who 1) want to obtain world-class training in systems neuroscience [optogenetics; chemogenetics; 2-photon and miniscope calcium imaging of neural circuit dynamics; fiber photometry; psychological, physiological and behavioural metrics at high temporal resolution in vivo; data time-series and other relevant analyses and coding in Matlab/Python] ; 2) are interested in our research focus as summarised here and in our publications - for lay overviews, see ETH press releases (e.g. eyes as windows into brain, neural basisof some"irrational" behaviour, tuning behaviour with diet); 3) possess excellent writing and coding skills, and insatiable curiosity and initiative to find and consume scientific information.
PhD positions: In addition to above, you need a masters (or equivalent) degree, and fit intellectually and socially into our lab. Please note that we do not usually specify precise plans of investitations at application stage, and instead decide the focus of PhD towards the second PhD year. In the first PhD year, we train the student in all our technologies and analyses, determine their ability within the latter, collect preliminary data, and based on this (and latest literature!) identify specific hypotheses to test. Our PhD projects last 3-6 years.
Masters: If you are registered as a master student at ETH or another Swiss or European university, you could join us for a long (ca 6 months) full-time project. This will be typically be part of a larger, already-established research study.
Postdoc positions: Something is usually available, please contact Denis Burdakov if you are interested and satisfy our general conditions above.
BIO
Denis joined ETH in 2017 from The Francis Crick Institute in London. He was born in 1979, and grew up in Kyiv, Ukraine, and the UK. He was educated at Oxford (BA 2001, PhD 2004), where he studied medicine, physiology, and biophysics. In addition to working as a Senior Group Leader at the Crick, he previously held tenured faculty appointments at the University of Cambridge (Associate Professor of Pharmacology) and at King's College London (Professor and Chair of Systems Neuroscience); he also held an honorary professorship at UCL and a visiting professorship at UFRGS, Brazil. He has been a recipient of awards and grants from the ERC (Starting Grant), HFSP (Young Investigator Award), SNSF, MRC, BBSCR, HHMI, The Royal Society, and Diabetes UK.
Additional information
SELECTED RESEARCH ACHIEVEMENTS:
Tesmer AL, Li X, Bracey E, Schmandt C, Polania R, Peleg-Raibstein D, Burdakov D (2024) Orexin neurons mediate temptation-resistant voluntary exercise. Nature Neuroscience, 27: 1774-1782
Viskaitis P, Tesmer AL, Liu Z, Karnani MM, Arnold M, Donegan D, Bracey E, Grujic N, Patriarchi T, Peleg-Raibstein D, Burdakov D (2024) Orexin neurons track temporal features of blood glucose in behaving mice. Nature Neuroscience, 27: 1299-1308
Li H-T, Viskaitis P, Bracey E, Peleg-Raibstein D, Burdakov D (2024) Transient targeting of hypothalamic orexin neurons alleviates seizures in a mouse model of epilepsy. Nature Communications, 15: 1249
Grujic N, Tesmer A, Bracey E, Peleg-Raibstein D, Burdakov D (2023) Control and coding of pupil size by hypothalamic orexin neurons, Nature Neuroscience, 26(7):1160-1164.
Li H-T, Donegan D, Peleg-Raibstein D, Burdakov D (2022) Hypothalamic deep brain stimulation as a strategy to manage anxiety disorders. PNAS,119(16): 1-9
Viskaitis P, Arnold M, Garau C, Jensen LT, Fugger L, Burdakov D (2022) Ingested non-essential amino acids recruit brain orexin cells to suppress eating in mice. Current Biology,32: 1-10
Concetti C, Peleg-Raibstein D, Burdakov D (2020) Control of fear extinction by hypothalamic MCH neurons. PNAS, 117(36): 22514-22521
Karnani M, Schöne C, Bracey E, Gonzalez J, Viskaitis P, Li H-T, Adamantidis A, Burdakov D (2020) Role of spontaneous and sensory orexin neuron dynamics in rapid locomotion initiation. Progress in Neurobiology, 187: 101771
Kosse C, Burdakov D (2019) Natural hypothalamic circuit dynamics underlying object memorization. Nature Communications, 10(1): 2505
Blomeley C, Garau C, Burdakov D (2018) Accumbal D2 cells orchestrate innate risk-avoidance according to orexin signals. Nature Neuroscience, 21(1): 29-32
Kosse C, Schöne C, Bracey E, Burdakov D (2017) Orexin-driven GAD65 network of the lateral hypothalamus sets physical activity in mice. PNAS, 114(17): 4525-4530
Gonzalez A, Iordanidou P, Strom M, Adamantidis A, Burdakov D (2016) Awake dynamics and brain-wide inputs of hypothalamic MCH and orexin networks. Nature Communications,7: 11395
Gonzalez A, Jensen L, Iordanidou P, Strom M, Fugger L, Burdakov D (2016) Inhibitory interplay between orexin neurons and eating. Current Biology, 26: 2486-2491
Schöne C, Apergis-Schoute J, Sakurai T, Adamantidis A, Burdakov D (2014) Co-released orexin and glutamate evoked non-redundant spike outputs and computations in histamine neurons. Cell Reports, 7: 697-704
Karnani M, Apergis-Schoute J, Adamantidis A, Jensen L, de Lecea L, Fugger L, Burdakov D (2011) Activation of central orexin/hypocretin neurons by dietary amino acids. Neuron, 74(2): 616-629
Williams RH, Alexopoulos H, Jensen LT, Fugger L, Burdakov D (2008) Adaptive sugar sensors in hypothalamic feeding circuits. PNAS, 105(33): 11975-11980
Gonzalez JA, Jensen LT, Fugger L, Burdakov (2008) Metabolism-independent sugar sensing in central orexin neurons. Diabetes 57(10): 2569-2576
Williams RH, Jensen LT, Vekhratsky A, Fugger L, Burdakov D (2007) Control of hypothalamic orexin neurons by acid and CO2. PNAS, 104(25): 10685-10690
Course Catalogue
Autumn Semester 2025
Number | Unit |
---|---|
377-0107-00L | Nervous System |
752-6305-00L | Physiology and Anatomy I |
752-6307-00L | Food, Habits and Health |
752-6308-00L | Physiology |